NAME

tree_gen.pl

SYNOPSIS

    tree_gen.pl turnip.matrix

DESCRIPTION

This helper script takes a TURNIP matrix and runs GENDIST to generate a distance matrix. It then runs quicktree and newicktops to produce a ps and png image file of your tree.

FEEDBACK

Reporting Bugs

Please report bugs to the author.

AUTHOR

Rob Davey

APPENDIX

Make sure you have the custom gendist source built for your system (the source files gendist.c, phylip.c and phylip.h should be packaged with the TURNIP distribution) to eradicate the interactive menus and allows infile and outfile arguments. Also make sure you have quicktree installed and newicktops (part of the njplot software package). These programs have been supplied as binaries (built on x86 architecture with GCC) in the bin/ directory.